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AtlasAlign

AtlasAlign

Align brain microscopy to an atlas, review and export ROIs

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AtlasAlign is an open-source Fiji/ImageJ2 plugin for mouse brain atlas alignment and ROI export. Beta.3 adds multichannel and composite viewing, registration pinned to C/Z/T, selected-plane exports, and saved review sessions. Refine alignment, edit anatomical ROIs, and export crops and masks in original image coordinates. Resume individual or batch reviews. Source images stay read-only; researchers review and accept the anatomy. Demo frames show the earlier interface.

AtlasAlign makers

Here are the founders, developers, designers and product people who worked on AtlasAlign

meghamsh teja konda@meghamsh_9969
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